Index

A

Activity (class in microsim.opencl.ramp.activity) ACTIVITY_DURATION (microsim.column_names.ColumnNames attribute) ACTIVITY_DURATION_INITIAL (microsim.column_names.ColumnNames attribute) ACTIVITY_FLOWS (microsim.column_names.ColumnNames attribute) ACTIVITY_RISK (microsim.column_names.ColumnNames attribute) ACTIVITY_VENUES (microsim.column_names.ColumnNames attribute) ActivityLocation (class in microsim.activity_location) add_disease_columns() (microsim.population_initialisation.PopulationInitialisation class method)

add_individual_flows() (microsim.population_initialisation.PopulationInitialisation class method) add_work_flows() (microsim.population_initialisation.PopulationInitialisation class method) ALL (microsim.column_names.ColumnNames.Activities attribute) (microsim.column_names.ColumnNames.DiseaseStatuses attribute) asarray() (microsim.opencl.ramp.params.Params method) ASYMPTOMATIC (microsim.column_names.ColumnNames.DiseaseStatuses attribute) Asymptomatic (microsim.opencl.ramp.disease_statuses.DiseaseStatus attribute) asymptomatic (microsim.opencl.ramp.params.IndividualHazardMultipliers property)

B

Buffers (class in microsim.opencl.ramp.buffers)

C

cache_files_exist() (microsim.initialisation_cache.InitialisationCache method) calc_nr_days() (in module microsim.dashboard) (in module microsim.dashboard_QUANT) calculate_disease_status() (microsim.r_interface.RInterface method) calculate_msoa_buildings() (in module microsim.load_msoa_locations) calculate_new_disease_status() (microsim.microsim_model.Microsim method) change_behaviour_with_disease() (microsim.microsim_model.Microsim method) check_durations_sum_to_1() (in module microsim.utilities) check_sim_flows() (microsim.population_initialisation.PopulationInitialisation class method) ColumnNames (class in microsim.column_names) ColumnNames.Activities (class in microsim.column_names)

ColumnNames.DiseaseStatuses (class in microsim.column_names) create_counts_dict() (in module microsim.dashboard) (in module microsim.dashboard_QUANT) create_difference_dict() (in module microsim.dashboard) (in module microsim.dashboard_QUANT) create_global_place_ids() (microsim.opencl.ramp.snapshot_convertor.SnapshotConvertor method) create_msoa_dangers_dict() (in module microsim.dashboard) (in module microsim.dashboard_QUANT) create_params() (in module microsim.main) create_venue_dangers_dict() (in module microsim.dashboard) (in module microsim.dashboard_QUANT) CURRENT_RISK (microsim.column_names.ColumnNames attribute)

D

data_setup() (in module microsim.utilities) DEAD (microsim.column_names.ColumnNames.DiseaseStatuses attribute) Dead (microsim.opencl.ramp.disease_statuses.DiseaseStatus attribute) device_name() (microsim.opencl.ramp.simulator.Simulator method) DISEASE_EXPOSED_DAYS (microsim.column_names.ColumnNames attribute) DISEASE_PRESYMP (microsim.column_names.ColumnNames attribute) DISEASE_STATUS (microsim.column_names.ColumnNames attribute) DISEASE_STATUS_CHANGED (microsim.column_names.ColumnNames attribute) DISEASE_SYMP_DAYS (microsim.column_names.ColumnNames attribute) DiseaseStatus (class in microsim.opencl.ramp.disease_statuses) download() (microsim.opencl.ramp.simulator.Simulator method) download_all() (microsim.opencl.ramp.simulator.Simulator method) download_data() (in module microsim.utilities)

draw() (microsim.opencl.ramp.inspector.Inspector method) draw_controls_window() (microsim.opencl.ramp.inspector.Inspector method) draw_grid() (microsim.opencl.ramp.inspector.Inspector method) draw_imgui() (microsim.opencl.ramp.inspector.Inspector method) draw_layers_window() (microsim.opencl.ramp.inspector.Inspector method) draw_lines() (microsim.opencl.ramp.inspector.Inspector method) draw_parameters_window() (microsim.opencl.ramp.inspector.Inspector method) draw_platform_window() (microsim.opencl.ramp.inspector.Inspector method) draw_plots() (microsim.opencl.ramp.summary.Summary method) draw_points() (microsim.opencl.ramp.inspector.Inspector method) draw_saveas_window() (microsim.opencl.ramp.inspector.Inspector method) draw_snapshots_window() (microsim.opencl.ramp.inspector.Inspector method) draw_timeseries_window() (microsim.opencl.ramp.inspector.Inspector method)

E

EXPOSED (microsim.column_names.ColumnNames.DiseaseStatuses attribute)

Exposed (microsim.opencl.ramp.disease_statuses.DiseaseStatus attribute) extract_msoas_from_individuals() (microsim.population_initialisation.PopulationInitialisation class method)

F

from_arrays() (microsim.opencl.ramp.snapshot.Snapshot class method)

fromarray() (microsim.opencl.ramp.params.Params class method)

G

generate_snapshot() (microsim.opencl.ramp.snapshot_convertor.SnapshotConvertor method) generate_travel_time_colums() (microsim.population_initialisation.PopulationInitialisation class method) get_age_dataframes() (microsim.opencl.ramp.summary.Summary method) get_area_dataframes() (microsim.opencl.ramp.summary.Summary method) get_coordinates_from_buildings() (microsim.opencl.ramp.snapshot_convertor.SnapshotConvertor method) get_dangers() (microsim.activity_location.ActivityLocation method) get_dataframe_copy() (microsim.activity_location.ActivityLocation method) get_df_columns() (microsim.opencl.ramp.summary.Summary method) get_flows() (microsim.quant_api.QuantRampAPI class method) get_global_place_id() (microsim.opencl.ramp.snapshot_convertor.SnapshotConvertor method) get_ids() (microsim.activity_location.ActivityLocation method) get_indices() (microsim.activity_location.ActivityLocation method) get_name() (microsim.activity_location.ActivityLocation method) get_not_home_probs() (microsim.opencl.ramp.snapshot_convertor.SnapshotConvertor method)

get_obesity_value() (in module microsim.opencl.ramp.snapshot_convertor) get_people_ages() (microsim.opencl.ramp.snapshot_convertor.SnapshotConvertor method) get_people_area_codes() (microsim.opencl.ramp.snapshot_convertor.SnapshotConvertor method) get_people_blood_pressure() (microsim.opencl.ramp.snapshot_convertor.SnapshotConvertor method) get_people_cvd() (microsim.opencl.ramp.snapshot_convertor.SnapshotConvertor method) get_people_diabetes() (microsim.opencl.ramp.snapshot_convertor.SnapshotConvertor method) get_people_obesity() (microsim.opencl.ramp.snapshot_convertor.SnapshotConvertor method) get_people_place_data() (microsim.opencl.ramp.snapshot_convertor.SnapshotConvertor method) get_place_coordinates() (microsim.opencl.ramp.snapshot_convertor.SnapshotConvertor method) get_place_data() (microsim.opencl.ramp.snapshot_convertor.SnapshotConvertor method) getProbableHospitalByMSOAIZ() (microsim.quant_api.QuantRampAPI static method) getProbablePrimarySchoolsByMSOAIZ() (microsim.quant_api.QuantRampAPI static method) getProbableRetailByMSOAIZ() (microsim.quant_api.QuantRampAPI static method) getProbableSecondarySchoolsByMSOAIZ() (microsim.quant_api.QuantRampAPI static method)

H

HOME (microsim.column_names.ColumnNames.Activities attribute)

Home (microsim.opencl.ramp.activity.Activity attribute) home (microsim.opencl.ramp.params.LocationHazardMultipliers property)

I

INDIVIDUAL_AGE (microsim.column_names.ColumnNames attribute) INDIVIDUAL_ETH (microsim.column_names.ColumnNames attribute) INDIVIDUAL_SEX (microsim.column_names.ColumnNames attribute) IndividualHazardMultipliers (class in microsim.opencl.ramp.params)

InitialisationCache (class in microsim.initialisation_cache) Inspector (class in microsim.opencl.ramp.inspector) is_active() (microsim.opencl.ramp.inspector.Inspector method) is_empty() (microsim.initialisation_cache.InitialisationCache method) is_pressed() (microsim.opencl.ramp.inspector.Inspector method)

K

Kernels (class in microsim.opencl.ramp.kernels)

key_callback() (microsim.opencl.ramp.inspector.Inspector method)

L

latlon_to_km() (in module microsim.opencl.ramp.projections) load_devon_msoas() (in module microsim.load_msoa_locations) load_full_snapshot() (microsim.opencl.ramp.snapshot.Snapshot class method) load_msoa_shapes() (in module microsim.load_msoa_locations) load_osm_shapefile() (in module microsim.load_msoa_locations)

load_shader() (in module microsim.opencl.ramp.shader) LOCATION_DANGER (microsim.column_names.ColumnNames attribute) LOCATION_ID (microsim.column_names.ColumnNames attribute) LOCATION_NAME (microsim.column_names.ColumnNames attribute) LocationHazardMultipliers (class in microsim.opencl.ramp.params)

M

main() (in module microsim.load_msoa_locations) microsim module Microsim (class in microsim.microsim_model) microsim.activity_location module microsim.column_names module microsim.dashboard module microsim.dashboard_QUANT module microsim.initialisation_cache module microsim.load_msoa_locations module microsim.main module microsim.microsim_model module microsim.opencl.ramp module microsim.opencl.ramp.activity module microsim.opencl.ramp.buffers module microsim.opencl.ramp.disease_statuses module microsim.opencl.ramp.inspector module microsim.opencl.ramp.kernels module microsim.opencl.ramp.opencl_dashboard module microsim.opencl.ramp.params module microsim.opencl.ramp.projections module microsim.opencl.ramp.run module microsim.opencl.ramp.shader module microsim.opencl.ramp.simulator module microsim.opencl.ramp.snapshot module

microsim.opencl.ramp.snapshot_convertor module microsim.opencl.ramp.style module microsim.opencl.ramp.summary module microsim.population_initialisation module microsim.quant_api module microsim.r_interface module microsim.utilities module module microsim microsim.activity_location microsim.column_names microsim.dashboard microsim.dashboard_QUANT microsim.initialisation_cache microsim.load_msoa_locations microsim.main microsim.microsim_model microsim.opencl.ramp microsim.opencl.ramp.activity microsim.opencl.ramp.buffers microsim.opencl.ramp.disease_statuses microsim.opencl.ramp.inspector microsim.opencl.ramp.kernels microsim.opencl.ramp.opencl_dashboard microsim.opencl.ramp.params microsim.opencl.ramp.projections microsim.opencl.ramp.run microsim.opencl.ramp.shader microsim.opencl.ramp.simulator microsim.opencl.ramp.snapshot microsim.opencl.ramp.snapshot_convertor microsim.opencl.ramp.style microsim.opencl.ramp.summary microsim.population_initialisation microsim.quant_api microsim.r_interface microsim.utilities

N

num_bytes() (microsim.opencl.ramp.params.Params method) (microsim.opencl.ramp.snapshot.Snapshot method)

O

Optimise (class in microsim.utilities)

optimize() (microsim.utilities.Optimise static method)

P

pad_durations() (microsim.population_initialisation.PopulationInitialisation class method) Params (class in microsim.opencl.ramp.params) params (microsim.opencl.ramp.buffers.Buffers property) people_ages (microsim.opencl.ramp.buffers.Buffers property) people_baseline_flows (microsim.opencl.ramp.buffers.Buffers property) people_blood_pressure (microsim.opencl.ramp.buffers.Buffers property) people_cvd (microsim.opencl.ramp.buffers.Buffers property) people_diabetes (microsim.opencl.ramp.buffers.Buffers property) people_flows (microsim.opencl.ramp.buffers.Buffers property) people_hazards (microsim.opencl.ramp.buffers.Buffers property) people_obesity (microsim.opencl.ramp.buffers.Buffers property) people_place_ids (microsim.opencl.ramp.buffers.Buffers property) people_prngs (microsim.opencl.ramp.buffers.Buffers property) people_recv_hazards (microsim.opencl.ramp.kernels.Kernels property) people_send_hazards (microsim.opencl.ramp.kernels.Kernels property) people_statuses (microsim.opencl.ramp.buffers.Buffers property)

people_transition_times (microsim.opencl.ramp.buffers.Buffers property) people_update_flows (microsim.opencl.ramp.kernels.Kernels property) people_update_statuses (microsim.opencl.ramp.kernels.Kernels property) place_activities (microsim.opencl.ramp.buffers.Buffers property) place_coords (microsim.opencl.ramp.buffers.Buffers property) place_counts (microsim.opencl.ramp.buffers.Buffers property) place_hazards (microsim.opencl.ramp.buffers.Buffers property) places_reset (microsim.opencl.ramp.kernels.Kernels property) platform_name() (microsim.opencl.ramp.simulator.Simulator method) PopulationInitialisation (class in microsim.population_initialisation) PRESYMPTOMATIC (microsim.column_names.ColumnNames.DiseaseStatuses attribute) Presymptomatic (microsim.opencl.ramp.disease_statuses.DiseaseStatus attribute) presymptomatic (microsim.opencl.ramp.params.IndividualHazardMultipliers property) PRIMARY (microsim.column_names.ColumnNames.Activities attribute) primary_school (microsim.opencl.ramp.params.LocationHazardMultipliers property) PrimarySchool (microsim.opencl.ramp.activity.Activity attribute) print_counts() (microsim.opencl.ramp.summary.Summary method)

Q

QuantRampAPI (class in microsim.quant_api)

R

random() (microsim.opencl.ramp.snapshot.Snapshot class method) read_commuting_flows_data() (microsim.population_initialisation.PopulationInitialisation class method) read_data() (microsim.quant_api.QuantRampAPI class method) read_from_cache() (microsim.initialisation_cache.InitialisationCache method) read_individual_time_use_and_health_data() (microsim.population_initialisation.PopulationInitialisation class method) read_retail_flows_data() (microsim.population_initialisation.PopulationInitialisation class method) read_school_flows_data() (microsim.population_initialisation.PopulationInitialisation class method) read_time_activity_multiplier() (microsim.population_initialisation.PopulationInitialisation static method) RECOVERED (microsim.column_names.ColumnNames.DiseaseStatuses attribute) Recovered (microsim.opencl.ramp.disease_statuses.DiseaseStatus attribute)

resize_callback() (microsim.opencl.ramp.inspector.Inspector method) RETAIL (microsim.column_names.ColumnNames.Activities attribute) Retail (microsim.opencl.ramp.activity.Activity attribute) retail (microsim.opencl.ramp.params.LocationHazardMultipliers property) RInterface (class in microsim.r_interface) run() (microsim.microsim_model.Microsim method) run_headless() (in module microsim.opencl.ramp.run) run_opencl() (in module microsim.opencl.ramp.run) run_opencl_model() (in module microsim.main) run_python_model() (in module microsim.main) run_with_gui() (in module microsim.opencl.ramp.run)

S

sanitize_coords() (microsim.opencl.ramp.snapshot.Snapshot method) save() (microsim.opencl.ramp.snapshot.Snapshot method) SECONDARY (microsim.column_names.ColumnNames.Activities attribute) secondary_school (microsim.opencl.ramp.params.LocationHazardMultipliers property) SecondarySchool (microsim.opencl.ramp.activity.Activity attribute) seed_prngs() (microsim.opencl.ramp.snapshot.Snapshot method) set_lockdown_multiplier() (microsim.opencl.ramp.params.Params method) set_styles() (in module microsim.opencl.ramp.style) Simulator (class in microsim.opencl.ramp.simulator) Snapshot (class in microsim.opencl.ramp.snapshot) SnapshotConvertor (class in microsim.opencl.ramp.snapshot_convertor) step() (microsim.microsim_model.Microsim method) (microsim.opencl.ramp.simulator.Simulator method)

step_all_kernels() (microsim.opencl.ramp.simulator.Simulator method) step_kernel() (microsim.opencl.ramp.simulator.Simulator method) step_with_seeding() (microsim.opencl.ramp.simulator.Simulator method) store_in_cache() (microsim.initialisation_cache.InitialisationCache method) store_summary_data() (in module microsim.opencl.ramp.run) Summary (class in microsim.opencl.ramp.summary) SUSCEPTIBLE (microsim.column_names.ColumnNames.DiseaseStatuses attribute) Susceptible (microsim.opencl.ramp.disease_statuses.DiseaseStatus attribute) switch_to_healthier_population() (microsim.opencl.ramp.snapshot.Snapshot method) SYMPTOMATIC (microsim.column_names.ColumnNames.DiseaseStatuses attribute) Symptomatic (microsim.opencl.ramp.disease_statuses.DiseaseStatus attribute) symptomatic (microsim.opencl.ramp.params.IndividualHazardMultipliers property)

T

TRAVEL_BUS (microsim.column_names.ColumnNames attribute) TRAVEL_CAR (microsim.column_names.ColumnNames attribute)

TRAVEL_TRAIN (microsim.column_names.ColumnNames attribute) TRAVEL_WALK (microsim.column_names.ColumnNames attribute)

U

unpack_data() (in module microsim.utilities) update() (microsim.opencl.ramp.inspector.Inspector method) (microsim.opencl.ramp.summary.Summary method) update_behaviour_during_lockdown() (microsim.microsim_model.Microsim method) update_camera() (microsim.opencl.ramp.inspector.Inspector method) update_dangers() (microsim.activity_location.ActivityLocation method) update_font_scale() (microsim.opencl.ramp.inspector.Inspector method)

update_params() (microsim.opencl.ramp.snapshot.Snapshot method) update_sim() (microsim.opencl.ramp.inspector.Inspector method) update_venue_danger_and_risks() (microsim.microsim_model.Microsim method) upload() (microsim.opencl.ramp.simulator.Simulator method) upload_all() (microsim.opencl.ramp.simulator.Simulator method) upload_hazards() (microsim.opencl.ramp.inspector.Inspector method) upload_links() (microsim.opencl.ramp.inspector.Inspector method) upload_locations() (microsim.opencl.ramp.inspector.Inspector method)

W

WORK (microsim.column_names.ColumnNames.Activities attribute)

Work (microsim.opencl.ramp.activity.Activity attribute) work (microsim.opencl.ramp.params.LocationHazardMultipliers property)

Z

zeros() (microsim.opencl.ramp.snapshot.Snapshot class method)